GenPipes: Step by Step

Welcome to the GenPipes Getting Started Guide!

This guide shows you how to get started with running genomic analysis pipelines supported by GenPipes, including how to deploy and access the software, reference genomes, tune and customize the pipelines, specify input configurations and setup the environment as per the pipeline pre-requisites.

If you wish to learn more about real life applications of GenPipes and its use cases refer to the GenPipes Applications section in the left hand side navigation pane.

This getting started guide comprises of the following topics to assist you in understanding and using GenPipes for solving complex bioinformatics research problems.

• Introducing GenPipes
• Using GenPipes for genomic analysis
• Viewing and Analyzing GenPipes Results
• Troubleshooting Runtime Issues