GenPipes 5.0.2 Release Notes
What’s new?
This is a bug-fix minor release :
Core updates:
Genpipes can now be loaded with module load genpipes/5.0.2 in addition to module load mugqic/genpipes/5.0.2
For users on abacus, the flag force_mem_per_cpu is now set by default
Bug fixed in the chunk_genpipes.sh script
Support script csvToreadset.R is now available for use
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grep call that was matching multiple samples in some cases is now fixed
Re-introduced SampleMetrics.tsv report that was removed in v5.0.1, it now includes additional metrics (number of peaks, frip)
Fixed missing input samples in IHEC metrics report
MultiQC report improved - the samtools flagstat metrics included now reflect the pre-filtered alignment stats, giving a better idea of total vs. mapped reads
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bumped version of pcgr to 2.1.2
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Bumped version of pcgr to 2.1.2
Improved handling of custom gtf files when using non-model genomes
Quick! Where can I find it? I can’t wait!
The latest release for GenPipes version 5.0.2 tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/genpipes-5.0.2.tar.gz
GenPipes is now distributed as a package via pypi: [https://pypi.org/project/c3g-genpipes/](https://pypi.org/project/c3g-genpipes/)
The module genpipes/5.0.2 is installed on Abacus (MGC), Béluga, Graham, Cedar and Narval Alliance clusters.
The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes
For latest GenPipes documentation, please refer to: https://genpipes.readthedocs.io/
Where is the detailed ChangeLog?
A ChangeLog (CHANGELOG.md) is available in the archive as well as in the repository.
Since we use git, there are many ways to get the details in many formats.
One of our preferred ways is to use a script written by the author of the Ray assembler: Sébastien Boisvert, which lists the commits by tag and author.
We look forward to your feedback!