GenPipes 3.1.0 Release Notes ============================a
What’s new?¶
added mugqicValidator.py to utils to validate basic structure of readset and design file
updated DNAseq - split the pipeline into 2 different pipeline GATK best_practice or old mpileup
updated HiCseq - added .hic file generation to capture hic, RobusTAD TAD scoring
added multiqc to ChIPseq
generation of the analysis JSON file is now optional (added the “–json” flag as a command-line parameter)
Quick! Where can I find it? I can’t wait!¶
This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/genpipes-3.1.0.tar.gz
The module mugqic/genpipes/3.1.3 is installed on Abacus, Guillimin, Mammouth-Mp2, Mammouth-Mp2b, Graham and Cedar clusters.
The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes