GenPipes Documentation Changelog

GenPipes documentation is continually being improved. The current release corresponds to GenPipes version 4.4.0.

This is the latest GenPipes RTD documentation.

What’s new?

  • The location of cluster specific ini files such as beluga.ini, cedar.ini has changed to $MUGQIC_PIPELINES_HOME/pipelines/common_ini folder from release v4.2.0

  • New improved documentation framework at RTD to address both new and existing GenPipes users.

  • Newer infographics oriented as opposed to text only information. Use of rich media in the future to make it more interesting and helpful for new users to find GenPipes information and learn about GenPipes and its usage.

Summary of Recent Changes

  • Release notes update for v4.4.0 by shaloo at 2023-03-13 04:16:48

  • update python version by shalz at 2023-01-19 14:49:09

    py 3.9

  • Update genpipes_push.yml by shalz at 2023-01-19 14:19:34

  • trying to fix build dependency errors by shalz at 2023-01-19 14:18:09

    commented out sphinx and RTD theme that should come from requirements.txt

  • Debugging build issue by shaloo at 2023-01-19 13:11:13

  • Fix requirements.txt for linux build at github by shaloo at 2023-01-19 13:03:41

  • Shaloo/192 rev updates (#196) by shalz at 2023-01-19 13:00:47

    * Refs #192 Tumor pair pipeline fastpass and ensemble schema update * Fix #192 tumor pair pipeline steps and schema updated reviewed draft by Rob * Fix requirements.txt

  • Refs: #195 GenPipes v4.3.2 RN updated by shaloo at 2022-12-10 05:11:28

  • Fix: #194 tumor pair is back and so remove the deprecation note. by shaloo at 2022-12-09 15:41:45

  • Fix: #193 common_ini dir issue fixed in all example commands for pipeline by shaloo at 2022-12-09 13:07:20

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