GenPipes 4.1.2 Release Notes

What’s new?

• Minor Updates:

  • Core scheduler minor fixes for PBS

  • remove cluster_submit_cmd from Slurm and PBS ini files

  • Nanopore_covseq pipeline adjustment to the prepare_report step resources in the base ini file to prevent this job getting stuck in the queue.

Quick! Where can I find it? I can’t wait!

• This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/genpipes-4.1.2.tar.gz

• The module mugqic/genpipes/4.1.2 is installed on Abacus (MGC), Béluga, Narval, Graham and Cedar clusters.

• The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes

• For latest GenPipes documentation, please refer to: https://genpipes.readthedocs.io/

Where is the detailed ChangeLog?

A ChangeLog (CHANGELOG.md) is available in the archive as well as in the repository.

Since we use git, there are many ways to get the details in many formats. One of our preferred ways is to use a script written by the author of the Ray assembler: Sébastien Boisvert, which lists the commits by tag and author:

https://raw.github.com/sebhtml/ray/master/scripts/dump-ChangeLog.sh

Enjoy our pipelines on the many clusters where they are installed!