GenPipes 3.1.3 Release Notes ============================a

What’s new?

• AmpliconSeq pipeline :

  • new dada2 protocol, which also becomes the default protocol

  • former protocol is set to QIIME protocol

• DNA-Seq pipeline :

  • GATK4 updates

  • newer and faster tools

• MethylSeq pipeline :

  • UMI deduplication integrated

Quick! Where can I find it? I can’t wait!

• This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/genpipes-3.1.3.tar.gz

• The module mugqic/genpipes/3.1.3 is installed on Abacus, Guillimin, Mammouth-Mp2, Mammouth-Mp2b, Graham and Cedar clusters.

• The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes/src/master