GenPipes 3.0.0 Release Notes ============================a

A new release of the GenAP pipelines, now called GenPipes, 3.0.0 is now available.

What’s new?

  • New MethylSeq pipeline : DNA methylation detection for bisulfite whole genome or targeted sequencing analysis - applies routine sequencing methods on bisulfite-treated DNA to determine methylation status at CpG dinucleotides.

  • New HicSeq pipeline : to analyze both Hi-C experimental and capture Hi-C data (Hi-C experiments allow researchers to understand chromosomal folding and structure using proximity ligation techniques)

  • New RNA-Seq Light pipeline : quick and accurate transcript-level expression quantification and exploratory analysis

  • Now each pipeline execution creates a JSON analysis file per analyzed sample in order to be able to monitor each sample analysis

  • Added a new pipeline specific argument : protocol - this allows to execute a specific set of steps for a pipeline depending on the chosen protocol ; initially developed for HiC-Seq pipeline, will be progressively deployed to all the other pipelines

  • Bug fixes

  • Some modules were added/updated

  • A new genome was installed :
    • Apis_mellifera.Amel_4.5

Quick! Where can I find it? I can’t wait!