GenPipes 3.0.0 Release Notes ============================a
A new release of the GenAP pipelines, now called GenPipes, 3.0.0 is now available.
What’s new?
New MethylSeq pipeline : DNA methylation detection for bisulfite whole genome or targeted sequencing analysis - applies routine sequencing methods on bisulfite-treated DNA to determine methylation status at CpG dinucleotides.
New HicSeq pipeline : to analyze both Hi-C experimental and capture Hi-C data (Hi-C experiments allow researchers to understand chromosomal folding and structure using proximity ligation techniques)
New RNA-Seq Light pipeline : quick and accurate transcript-level expression quantification and exploratory analysis
Now each pipeline execution creates a JSON analysis file per analyzed sample in order to be able to monitor each sample analysis
Added a new pipeline specific argument : protocol - this allows to execute a specific set of steps for a pipeline depending on the chosen protocol ; initially developed for HiC-Seq pipeline, will be progressively deployed to all the other pipelines
Bug fixes
Some modules were added/updated
- A new genome was installed :
Apis_mellifera.Amel_4.5
Quick! Where can I find it? I can’t wait!
This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/GenAP_Pipes-3.0.0.tar.gz
The module mugqic/genpipes/3.1.3 is installed on Abacus, Guillimin, Mammouth-Mp2, Mammouth-Mp2b, Graham and Cedar clusters.
The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes