GenPipes 2.3.0 Release Notes

A new release of GenPipes version 2.3.0 is now available.

What’s new?

• New Tumor Pair pipeline : a sensitive ensemble approach for detection of somatic and germline variants

• Added an optional step to our PacBio Assembly pipeline to circularize the assembly contigs using the circlator python package

• Bug fixes

  • One of these bugs, in our RNA-Seq pipeline, was causing the reverse strand bed graph to always be empty

• Some modules were added or were updated

• New genomes were installed :

  • Bos_taurus.UMD3.1

  • Macaca_mulatta.MMUL_1

  • Pan_troglodytes.CHIMP2.1.4

  • Pan_troglodytes.panTro4

  • Papio_anubis.PapAnu2.0

Quick! Where can I find it? I can’t wait!

• This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/mugqic_pipelines-2.3.0.tar.gz

Compute Canada Servers abacus, guillimin and mammouth clusters are updated with this new release.

The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes/src/master