GenPipes 2.3.0 Release Notes

A new release of GenPipes version 2.3.0 is now available.

What’s new?

  • New Tumor Pair pipeline : a sensitive ensemble approach for detection of somatic and germline variants

  • Added an optional step to our PacBio Assembly pipeline to circularize the assembly contigs using the circlator python package

  • Bug fixes
    • One of these bugs, in our RNA-Seq pipeline, was causing the reverse strand bed graph to always be empty

  • Some modules were added or were updated

  • New genomes were installed :
    • Bos_taurus.UMD3.1

    • Macaca_mulatta.MMUL_1

    • Pan_troglodytes.CHIMP2.1.4

    • Pan_troglodytes.panTro4

    • Papio_anubis.PapAnu2.0

Quick! Where can I find it? I can’t wait!

Compute Canada Servers abacus, guillimin and mammouth clusters are updated with this new release.

The source code is in bitbucket: