.. _docs_gp_tumorpair:

.. spelling:word-list::

      ploidy
      sv
      fastpass
      vcf
      VCF
      CNV
      Koboldt
      Preprocess
      bp
      Ensembl
      vcfanno
      Kataegis
      Microsatellite
      
Tumor Pair Sequencing Pipeline (Merged)
=======================================

.. danger::

   **Deprecated**

   Starting from GenPipes v5.x, the Tumor Pair Sequencing Pipeline is **no longer available as a standalone option**. Please use the :ref:`DNA Sequencing Pipeline<docs_gp_dnaseq>` instead.

   Documentation for the Tumor Pair Pipeline in GenPipes v4.6.1 is available `here <https://genpipes.readthedocs.io/en/genpipes-v4.6.1/user_guide/pipelines/gp_tumourpair.html>`_.