:orphan:

.. _docs_gp_relnote_3_1_4:

.. spelling:word-list::

     methylkit
     cufflinks
     genpipes

GenPipes 3.1.4 Release Notes
============================

What's new? 
-----------

* Bugs and issues which were introduced in GenPipes 3.1.3 and causing pipeline crash have been addressed and corrected
* Latest version of mugqic_tools (v2.2.2) is now used per default by GenPipes
* Latest version of mugqic_R_packages (v1.0.6) is now used per default by GenPipes
* MethylSeq pipeline :
   - Differential methylation analysis with 'methylkit'
* Improvements of the RNASeq pipeline :
   - StringTie protocol added and set as default protocol : faster than cufflinks
* Improvements of the RNASeq_llight pipeline :
   - Added a differential analysis step, using Sleuth
* New log_report.py released for job tracking on a SLURM scheduler
* Config files for Cedar, Mp2b clusters are now available for all the pipelines
* Drafts of config files for Beluga cluster are now also available

Quick! Where can I find it? I can't wait! 
------------------------------------------
 
* This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/genpipes-3.1.4.tar.gz

* If you have a Compute Canada CCDB user account, the module mugqic/genpipes/3.1.4 is installed on Abacus, Guillimin, Mammouth-Mp2b, Graham and Cedar clusters, and soon will be deployed on Beluga as well.

* The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes