:orphan:

.. _docs_gp_relnote_3_1_3:

.. spelling:word-list::

    deduplication
    genpipes

GenPipes 3.1.3 Release Notes
============================a

What's new? 
-----------

* AmpliconSeq pipeline :
   - new dada2 protocol, which also becomes the default protocol
   - former protocol is set to QIIME protocol
* DNA-Seq pipeline :
   - GATK4 updates
   - newer and faster tools
* MethylSeq pipeline :
   - UMI deduplication integrated

Quick! Where can I find it? I can't wait! 
-----------------------------------------

* This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/genpipes-3.1.3.tar.gz

* The module mugqic/genpipes/3.1.3 is installed on Abacus, Guillimin, Mammouth-Mp2, Mammouth-Mp2b, Graham and Cedar clusters.
  
* The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes/src/master