:orphan:

.. _docs_gp_relnote_2_3_0:

.. spelling:word-list::

    smrtanalysis
    htseq

GenPipes 2.3.0 Release Notes
============================

A new release of GenPipes version 2.3.0 is now available.

What's new? 
------------

* New Tumor Pair pipeline : a sensitive ensemble approach for detection of somatic and germline variants
* Added an optional step to our PacBio Assembly pipeline to circularize the assembly contigs using the circlator python package
* Bug fixes
    - One of these bugs, in our RNA-Seq pipeline, was causing the reverse strand bed graph to always be empty
* Some modules were added or were updated
* New genomes were installed :
    - Bos_taurus.UMD3.1
    - Macaca_mulatta.MMUL_1
    - Pan_troglodytes.CHIMP2.1.4
    - Pan_troglodytes.panTro4
    - Papio_anubis.PapAnu2.0

Quick! Where can I find it? I can't wait! 
------------------------------------------

* This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/mugqic_pipelines-2.3.0.tar.gz

Compute Canada Servers abacus, guillimin and mammouth clusters are updated with this new release.

The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes/src/master