:orphan:

.. _docs_gp_relnote_2_1_0:

.. spelling:word-list::

    smrtanalysis
    htseq

GenPipes 2.1.0 Release Notes
============================

A new minor version of GenPipes 2.1.0 is now available.

What's new? 
------------

* ChIP-Seq pipeline is now up and running. It uses MACS2 (2.1.0), HOMER 4.7 and the available genomes are: UCSC hg19, mm9, mm10, rn5. Please note that as compared to the previous version of ChIP-Seq pipeline, the values '1' for control and '2' for treatment are reversed compared to the old Perl version! 
* PacBio Assembly pipeline upgraded smrtanalysis 2.3.0 to patch 2 
* PacBio Assembly and RNA-Seq pipelines have now a config file for mammouth 
* Module install scripts simplified 
* Fixed bug in RNA-Seq htseq-count 

Quick! Where can I find it? I can't wait! 
------------------------------------------

* This version tarball is in: https://bitbucket.org/mugqic/genpipes/downloads/mugqic_pipelines-2.1.0.tar.gz 

Compute Canada Servers abacus, guillimin and mammouth clusters are updated with this new release.

The source code is in bitbucket: https://bitbucket.org/mugqic/genpipes/src/master