GenPipes Documentation Changelog

GenPipes documentation is continually being improved. The current release corresponds to GenPipes version 4.6.1.

This is the latest GenPipes RTD documentation.

What’s new?

  • The location of cluster specific ini files such as beluga.ini, cedar.ini has changed to $MUGQIC_PIPELINES_HOME/pipelines/common_ini folder from release v4.2.0

  • New improved documentation framework at RTD to address both new and existing GenPipes users.

  • Newer infographics oriented as opposed to text only information. Use of rich media in the future to make it more interesting and helpful for new users to find GenPipes information and learn about GenPipes and its usage.

Summary of Recent Changes

  • Refs: #250 Methylseq pipeline schema update for Dragen, Hybrid along with note by shaloo at 2024-06-27 06:35:33

    (cherry picked from commit b6a735a8094338fd9f67530d74fb7784641d0b0b)

  • Fix: #229 Methylseq updates by shaloo at 2024-06-16 14:36:43

  • cufflinks info on deprecation added in module list by shaloo at 2024-06-06 04:13:53

  • Fix: #249 Release Note 4.6.1 update not to be published by shaloo at 2024-06-06 03:47:37

  • Fix: #228 RNASeq schema upate for stringtie, variants and cancer protocols by shaloo at 2024-06-01 13:44:33

  • Fix: #228 RNASeq schema upate for stringtie, variants and cancer protocols by shaloo at 2024-06-01 13:44:05

  • Fix: #211 covseq test dataset no link available, added note by shaloo at 2024-05-14 06:02:26

  • Fix: #224 RNA Seq steps updated as per v4.6.0 by shaloo at 2024-05-05 12:04:19

  • Fix: #247 chipseq input warning by shaloo at 2024-05-04 13:30:19

  • Fix: #248 RN update, tag and publish docs for v4.6.0 by shaloo at 2024-05-04 12:05:38

Commit Tracker

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