This document contains information on available current publications and other media such as scientific papers, citations, videos etc. that can help new GenPipes users build a better understanding of GenPipes and how it works.
GigaScience Article June 2019: GenPipes: an open-source framework for distributed and scalable genomic analysis.
Biorxiv Archives Nov 2018 : GenPipes Paper.
How to run C3G-GenPipes on Compute Canada cluster - see video below.
Amplicon Sequencing generates metagenomics output. The Metagenomics Figures video shows how to build custom OTU figures and tables from C3G’s metagenomics output.
Amplicon Sequencing pipeline Trimmomatic16S Step generates 16S analysis data that can be examined and plotted as demonstrated in 16S analysis video.