Pipelines Reference GuideΒΆ

GenPipes implements standardized genomics workflows, including DNA-Seq, tumour analysis, RNA-Seq, de novo RNA-Seq, ChIP-Seq, Pacific Biosciences (PacBio) assembly, methylation sequencing, Hi-C, capture Hi-C, and metagenomics. All pipelines have been implemented following a robust design and development routine by following established best practices standard operating protocols. The pipelines accept a binary sequence alignment map (BAM) or a FASTQ file as input.

This guide contains usage manual and reference information for all available GenPipes genomic analysis pipelines. Visit GenPipes Real-life Applications and use cases to see how these pipelines can be deployed for complex next-generation genomic analysis in real life scenarios.