GenPipes Documentation Changelog

GenPipes documentation is continually being improved. The current release corresponds to GenPipes version 4.6.0.

This is the latest GenPipes RTD documentation.

What’s new?

  • The location of cluster specific ini files such as beluga.ini, cedar.ini has changed to $MUGQIC_PIPELINES_HOME/pipelines/common_ini folder from release v4.2.0

  • New improved documentation framework at RTD to address both new and existing GenPipes users.

  • Newer infographics oriented as opposed to text only information. Use of rich media in the future to make it more interesting and helpful for new users to find GenPipes information and learn about GenPipes and its usage.

Summary of Recent Changes

  • Fix: #211 covseq test dataset no link available, added note by shaloo at 2024-05-14 06:02:26

  • Fix: #224 RNA Seq steps updated as per v4.6.0 by shaloo at 2024-05-05 12:04:19

  • Fix: #247 chipseq input warning by shaloo at 2024-05-04 13:30:19

  • Fix: #248 RN update, tag and publish docs for v4.6.0 by shaloo at 2024-05-04 12:05:38

  • Fix: #215 nanopore example run command added via MJ by shaloo at 2024-05-04 07:15:02

  • Fix: #243 Layout of all pipelines complete as per Tumor pair by shaloo at 2024-05-04 06:45:22

  • Refs: #243 Hi-C pipeline layout update by shaloo at 2024-05-01 14:39:42

  • Ref: #243 EpiQC Pipeline layout update by shaloo at 2024-05-01 10:38:46

  • Refs: #243 RNA Seq Light md -> rst for new layout by shaloo at 2024-05-01 09:45:36

  • Refs: #243 RNA Seq DeNovo new layout by shaloo at 2024-04-24 15:55:12

Commit Tracker

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